# First-principles lattice thermal conductivity calculation for La2SiSeO4 / Pbcm (57) / materials id 17834 https://mdr.nims.go.jp/datasets/ba9dd2fb-80f7-40cc-8de8-2299b99bc0b4 ## File - [FORCES_FC3.xz](https://mdr.nims.go.jp/filesets/80b31818-dfa0-41b1-a0b4-1d1e52075cd3/download) ([Detail](https://mdr.nims.go.jp/filesets/80b31818-dfa0-41b1-a0b4-1d1e52075cd3.md)) - [LTC-calc.log](https://mdr.nims.go.jp/filesets/635ea336-f917-450f-a8f3-49440bf0e9ee/download) ([Detail](https://mdr.nims.go.jp/filesets/635ea336-f917-450f-a8f3-49440bf0e9ee.md)) - [phono3py_mlp_eval_fc3_disp.yaml.xz](https://mdr.nims.go.jp/filesets/6f002be0-708d-4544-b27f-db2156fa5b2a/download) ([Detail](https://mdr.nims.go.jp/filesets/6f002be0-708d-4544-b27f-db2156fa5b2a.md)) - [phonopy_mlp_eval_fc2_dataset.yaml.xz](https://mdr.nims.go.jp/filesets/98eaafbe-67d9-4602-98df-0d86c654f3c8/download) ([Detail](https://mdr.nims.go.jp/filesets/98eaafbe-67d9-4602-98df-0d86c654f3c8.md)) - [phonopy_training_dataset.yaml.xz](https://mdr.nims.go.jp/filesets/aa582908-2a87-4864-b3e5-da385530afe6/download) ([Detail](https://mdr.nims.go.jp/filesets/aa582908-2a87-4864-b3e5-da385530afe6.md)) - [polymlp.yaml.xz](https://mdr.nims.go.jp/filesets/d84df772-f8c9-4488-9ec0-e8eaa13972da/download) ([Detail](https://mdr.nims.go.jp/filesets/d84df772-f8c9-4488-9ec0-e8eaa13972da.md)) - [vasp-settings.tar.xz](https://mdr.nims.go.jp/filesets/b256359b-7b56-4791-ab6a-20043cfee77b/download) ([Detail](https://mdr.nims.go.jp/filesets/b256359b-7b56-4791-ab6a-20043cfee77b.md)) - [band_pdos.png](https://mdr.nims.go.jp/filesets/4654a81e-2a8f-4286-aec1-89a97ce104f9/download) ([Detail](https://mdr.nims.go.jp/filesets/4654a81e-2a8f-4286-aec1-89a97ce104f9.md)) ## Id ba9dd2fb-80f7-40cc-8de8-2299b99bc0b4 ## Local identifier identifier: MDR-LTC-2026Jan9/mp-17834 ## Visibility open_to_public ## State published ## Created at 2026-01-15T07:05:26.448876Z ## Updated at 2026-01-24T02:50:32.034853Z ## Published at 2026-01-24T01:51:25.613966Z ## Doi ## First published url ## Date published ## Recorded date published ## Resource type dataset ## Manuscript type na ## Collection - id: 0113dccc-ec45-42ed-86db-f455f9b63fb1 identifier: https://mdr.nims.go.jp/pid/0113dccc-ec45-42ed-86db-f455f9b63fb1 title: MDR lattice thermal conductivity calculation database ## Title - title: First-principles lattice thermal conductivity calculation for La2SiSeO4 / Pbcm (57) / materials id 17834 title_type: original lang: en ## Description - description: | Input data used to calculate the lattice thermal conductivities of La2SiSeO4. description_type: abstract lang: en - description: | Initial geometry optimization of the conventional unit cell, standardized by the spglib code, was performed using the VASP code with the PBEsol exchange-correlation functional. Supercell forces and energies were calculated using the VASP code, and these data were used to develop polynomial machine learning potentials (MLPs) with the pypolymlp code. The generated MLPs are stored in polymlp.yaml.xz. Parameters required for the non-analytical term correction (Born effective charges and dielectric constants) were calculated using the VASP code with the primitive cell. These VASP results are provided in phonopy_training_dataset.yaml.xz, and the VASP input configurations can be found in vasp-settings.tar.xz. The primitive cell, unit cell, and supercell structures used for the VASP calculations are also provided in phonopy_training_dataset.yaml.xz. The internal atomic positions of the supercell were then optimized using the pypolymlp code under symmetry constraints; the relaxed structure can be found in phonopy_mlp_eval_fc2_dataset.yaml.xz (or phono3py_mlp_eval_fc3_disp.yaml.xz). Second-order force constants (fc2) can be calculated using the phonopy and symfc codes with the displacement–force dataset evaluated by the pypolymlp code, which is stored in phonopy_mlp_eval_fc2_dataset.yaml.xz. Third-order force constants (fc3) can be calculated using the built-in finite difference approach in the phono3py code with the displacement–force dataset stored in phono3py_mlp_eval_fc3_disp.yaml.xz (displacements) and FORCES_FC3.xz (forces). As an example, lattice thermal conductivities (LTCs) were calculated using the phono3py code with fc2 and fc3, and the calculation log is provided in LTC-calc.log. The harmonic phonon band structure and density of states are plotted in band_pdos.png. The band path was generated using the SeeK-path code. description_type: abstract lang: en ## Creator - name: Atsushi Togo role: author orcid: https://orcid.org/0000-0001-8393-9766 organization: National Institute for Materials Science department: Center for Basic Research on Materials ror: https://ror.org/026v1ze26 ## Contact agent - name: Atsushi Togo email: togo.atsushi@nims.go.jp organization: National Institute for Materials Science ror: https://ror.org/026v1ze26 ## Publisher organization: NIMS ror: https://ror.org/026v1ze26 ## Managing organization organization: National Institute for Materials Science department: CBRM ror: https://ror.org/026v1ze26 ## Keyword - subject: Lattice thermal conductivity schema: not_defined - subject: La2SiSeO4 schema: not_defined ## Rights - description: Creative Commons Attribution 4.0 International identifier: https://creativecommons.org/licenses/by/4.0/ ## Other identifier(s) ## Data origin - data_origin_type: simulation ## Embargo ## Journal ## Conference ## Related item ## Funding ## Instrument ## Instrument operator ## Instrument managing organization ## Measurement method ## Specimen - name: La2SiSeO4 description: La2SiSeO4 ## Chemical composition - identifier: La2SiSeO4 description: La2SiSeO4 ## Structure for specimen - description: La2SiSeO4 category_description: La2SiSeO4 ## Structural feature for specimen ## Specific property for specimen ## Process for specimen treatment ## Computational method ## Energy level/transition state ## Software - name: phono3py identifier: https://github.com/phonopy/phono3py - name: phonopy identifier: https://github.com/phonopy/phonopy - name: spglib identifier: https://github.com/spglib/spglib - name: symfc identifier: https://github.com/symfc/symfc - name: pypolymlp identifier: https://github.com/sekocha/pypolymlp - name: VASP identifier: https://www.vasp.at/ - name: Seek-path identifier: https://github.com/giovannipizzi/seekpath ## Custom property ## Fileset - id: 80b31818-dfa0-41b1-a0b4-1d1e52075cd3 filename: FORCES_FC3.xz content_type: application/x-xz size: 29198492 md5: d65e607ead9e8bed7905e7fd5ec0ff8b - id: 635ea336-f917-450f-a8f3-49440bf0e9ee filename: LTC-calc.log content_type: text/x-log size: 393739 md5: ecbad1749b5606fe77f91082cc0215ff - id: 6f002be0-708d-4544-b27f-db2156fa5b2a filename: phono3py_mlp_eval_fc3_disp.yaml.xz content_type: application/x-xz size: 37760 md5: 186ea4a8b941b8403d3debf23cdb020f - id: 98eaafbe-67d9-4602-98df-0d86c654f3c8 filename: phonopy_mlp_eval_fc2_dataset.yaml.xz content_type: application/x-xz size: 2132480 md5: ffecf35266bcfe8f4b31aa50b4262003 - id: aa582908-2a87-4864-b3e5-da385530afe6 filename: phonopy_training_dataset.yaml.xz content_type: application/x-xz size: 925736 md5: 90bca8caa5758053ab18af151763a223 - id: d84df772-f8c9-4488-9ec0-e8eaa13972da filename: polymlp.yaml.xz content_type: application/x-xz size: 887116 md5: 36ed85bda87b355df3b4fab756d3d153 - id: b256359b-7b56-4791-ab6a-20043cfee77b filename: vasp-settings.tar.xz content_type: application/x-xz size: 568 md5: 7a5a46a65408eb393d52bb690d65f152 - id: 4654a81e-2a8f-4286-aec1-89a97ce104f9 filename: band_pdos.png content_type: image/png size: 91989 md5: c1b4cfcce5c35466f5faa8ebafb58f7d ## Thumbnail fileset_id: 4654a81e-2a8f-4286-aec1-89a97ce104f9 filename: band_pdos.png