# Ab-initio phonon calculation for PPdSe / Pbcn (60) / materials id 3123

https://mdr.nims.go.jp/datasets/42e424b0-fb6f-4cc4-a267-036d6c0edcf9

## File

- [band_structure.png](https://mdr.nims.go.jp/filesets/2dee4127-5811-4980-bb06-3ad863919c95/download) ([Detail](https://mdr.nims.go.jp/filesets/2dee4127-5811-4980-bb06-3ad863919c95.md))
- [projected_dos.png](https://mdr.nims.go.jp/filesets/7e069f25-2ff4-4d07-af9e-e731a6259c7b/download) ([Detail](https://mdr.nims.go.jp/filesets/7e069f25-2ff4-4d07-af9e-e731a6259c7b.md))
- [thermal_properties.png](https://mdr.nims.go.jp/filesets/366e32b1-c209-4f57-b6a5-40c1d9943029/download) ([Detail](https://mdr.nims.go.jp/filesets/366e32b1-c209-4f57-b6a5-40c1d9943029.md))
- [total_dos.png](https://mdr.nims.go.jp/filesets/7883a608-a692-44d6-a7f4-1273d3f11768/download) ([Detail](https://mdr.nims.go.jp/filesets/7883a608-a692-44d6-a7f4-1273d3f11768.md))
- [phonopy_params.yaml.xz](https://mdr.nims.go.jp/filesets/5d936789-34c4-45a9-9e26-622cc2f6e4ae/download) ([Detail](https://mdr.nims.go.jp/filesets/5d936789-34c4-45a9-9e26-622cc2f6e4ae.md))
- [vasp-settings.tar.lzma](https://mdr.nims.go.jp/filesets/65c0a569-f2a5-4aa9-8cd6-e56664b0398a/download) ([Detail](https://mdr.nims.go.jp/filesets/65c0a569-f2a5-4aa9-8cd6-e56664b0398a.md))

## Id

42e424b0-fb6f-4cc4-a267-036d6c0edcf9

## Local identifier

identifier: 8f5f79b2-0c92-4762-b637-1259e18b6748/mp-3123

## Visibility

open_to_public

## State

published

## Created at

2023-05-12T03:17:14.796778Z

## Updated at

2023-05-14T09:47:42.840223Z

## Published at

2023-05-14T14:37:39.325898Z

## Doi



## First published url

http://phonondb.mtl.kyoto-u.ac.jp/

## Date published



## Recorded date published



## Resource type

dataset

## Manuscript type

na

## Collection

- id: d7aab932-8512-4b9a-b93d-b61f6e5e7019
  identifier: https://mdr.nims.go.jp/pid/d7aab932-8512-4b9a-b93d-b61f6e5e7019
  title: MDR phonon calculation database

## Title

- title: Ab-initio phonon calculation for PPdSe / Pbcn (60) / materials id 3123
  title_type: original
  lang: en

## Description

- description: |
    Ab-initio phonon calculation for PPdSe / Pbcn (60)
    Phonon band structure, phonon DOS, thermal properties at constant volume, and phonon raw data are presented.
    The initial crystal structure used to perform phonon calculation is obtained from the Materials Project using
    pymatgen MPRester. The phonon band structure paths are determined using SeeK-path.
  description_type: abstract
  lang: en

## Creator

- name: Atsushi Togo
  role: author
  orcid: https://orcid.org/0000-0001-8393-9766
  organization: National Institute for Materials Science
  department: MaDIS
  ror: https://ror.org/026v1ze26

## Contact agent

- name: Atsushi Togo
  email: togo.atsushi@nims.go.jp
  organization: NIMS
  ror: https://ror.org/026v1ze26

## Publisher

organization: NIMS
ror: https://ror.org/026v1ze26

## Managing organization

organization: National Institute for Materials Science
department: MaDIS
ror: https://ror.org/026v1ze26

## Keyword

- subject: Phonon
  schema: not_defined
- subject: PPdSe
  schema: not_defined
- subject: Pbcn (60)
  schema: not_defined

## Rights

- description: Creative Commons Attribution 4.0 International
  identifier: https://creativecommons.org/licenses/by/4.0/

## Other identifier(s)



## Data origin

- data_origin_type: simulation

## Embargo



## Journal



## Conference



## Related item

- identifier: https://www.materialsproject.org/materials/mp-3123/
  identifier_type: URI
  relation_type: refers
  related_item_type: dataset

## Funding

- funder_name: MEXT
  description: Supported by MEXT Japan through ESISM (Elements Strategy Initiative
    for Structural Materials) of Kyoto University

## Instrument



## Instrument operator



## Instrument managing organization



## Measurement method



## Specimen

- name: PPdSe
  description: PPdSe
  identifier: mp-3123

## Chemical composition

- identifier: mp-3123
  description: PPdSe, Z=8

## Structure for specimen

- description: PPdSe / Pbcn (60)
  category_description: PPdSe / Pbcn (60)

## Structural feature for specimen



## Specific property for specimen



## Process for specimen treatment



## Computational method

- description: Calculation details are found in the phonon raw data.
  category_description: First principles phonon calculation

## Energy level/transition state



## Software

- name: phonopy
  identifier: https://github.com/phonopy/phonopy
- name: spglib
  identifier: https://github.com/spglib/spglib
- name: VASP
  identifier: https://www.vasp.at/

## Custom property



## Fileset

- id: 2dee4127-5811-4980-bb06-3ad863919c95
  filename: band_structure.png
  content_type: image/png
  size: 81521
  md5: e4abeb489053f982f2e2acee6a366d33
- id: 7e069f25-2ff4-4d07-af9e-e731a6259c7b
  filename: projected_dos.png
  content_type: image/png
  size: 36827
  md5: df5bb8bba8d94052411e7698ee2c2d64
- id: 366e32b1-c209-4f57-b6a5-40c1d9943029
  filename: thermal_properties.png
  content_type: image/png
  size: 26489
  md5: 2d04b8a2014822a5ecc860433918345d
- id: 7883a608-a692-44d6-a7f4-1273d3f11768
  filename: total_dos.png
  content_type: image/png
  size: 23912
  md5: 420deb7c8ec1b4d6237b3726e60cda5d
- id: 5d936789-34c4-45a9-9e26-622cc2f6e4ae
  filename: phonopy_params.yaml.xz
  content_type: application/x-xz
  size: 24500
  md5: 415236695e5aee6364490611910b00ab
- id: 65c0a569-f2a5-4aa9-8cd6-e56664b0398a
  filename: vasp-settings.tar.lzma
  content_type: application/x-xz
  size: 940
  md5: c868ae1e4d51a0c117d6ed63b63bf334

## Thumbnail

fileset_id: 2dee4127-5811-4980-bb06-3ad863919c95
filename: band_structure.png