論文 Unveiling the Intermolecular Interactions between Drug 5-Fluorouracil and Watson–Crick/Hoogsteen Base Pairs: A Computational Analysis

Natarajan Sathiyamoorthy Venkataramanan ; Ambigapathy Suvitha ; Ryoji Sahara SAMURAI ORCID (National Institute for Materials Science)

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引用
Natarajan Sathiyamoorthy Venkataramanan, Ambigapathy Suvitha, Ryoji Sahara. Unveiling the Intermolecular Interactions between Drug 5-Fluorouracil and Watson–Crick/Hoogsteen Base Pairs: A Computational Analysis. ACS Omega. 2024, 9 (23), 24831-24844. https://doi.org/10.1021/acsomega.4c01545
SAMURAI

説明:

(abstract)

The adsorption of 5-Fluorouracil (5FU) on Watson-Crick (WC) base pairs and Hoogsteen (HT) base pairs have been studied using the dispersion corrected density functional theory. The adsorption, binding energy, and thermochemistry for the drug 5FU on the WC and HT base pairs were determined. The most stable geometries were near planar geometry and 5FU has a higher preference for WC than HT base pairs. The adsorption energies of 5FU on nucleobase pairs are consistently higher than pristine nucleobase pairs which indicates that nucleobase pair cleavage is less likely during the adsorption of the 5FU drug. The enthalpy change for the 5FU-DNA base pairs formation is higher than the 5FU-nucleobases formation and is enthalpy driven. The Egap of AT base pairs are higher which suggests that their chemical reactivity towards further reaction would be less compared to GC base pairs. The electrophilicity-based charge transfer indicates that an electron transfer occurs from the 5FU drug to the base pair.

権利情報:

キーワード: density functional theory, Watson−Crick/Hoogsteen Base Pairs, 5-fluorouracil

刊行年月日: 2024-06-11

出版者: American Chemical Society (ACS)

掲載誌:

  • ACS Omega (ISSN: 24701343) vol. 9 issue. 23 p. 24831-24844

研究助成金:

  • AD3090

原稿種別: 出版者版 (Version of record)

MDR DOI:

公開URL: https://doi.org/10.1021/acsomega.4c01545

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更新時刻: 2024-06-25 12:30:13 +0900

MDRでの公開時刻: 2024-06-25 12:30:13 +0900

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